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ILE655VAL Genotyping Study of HER2 - Positive Breast Cancer of Patients from Padang - Indonesia With High Resolution Melting Technique

ILE655VAL Genotyping Study of HER2 - Positive Breast Cancer of Patients from Padang - Indonesia With High Resolution Melting Technique

Dwi Wulandari, Azamris Azamris, Isna Nurhayati, M Ali Warisman, Bugi Ratno Budiarto, Desriani Desriani

Annales Bogorienses Vol. 21, No. 2: 69-75

her2Trastuzumab has proven to be a great improvement in the treatment of HER2+ breast cancer patients, but it is associated with relevant adverse cardiac events and significantly elevated cost of treatment. One of the risk factor for cardiotoxicity due to trastuzumab is the I655V HER2 polymorphism (GTC> ATC mutation) in which the allele mutant (Ile/Val or Val/Val) has a higher risk than the wild type (Ile/Ile). The detection of specific alleles is very important for therapeutic decision-making. In this study, our group has developed a high resolution melting (HRM) with EvaGreen dye method to discriminate specific allele of I655V HER2 (wild type, heterozygote mutant or homozygote mutant) in 66 frozen section samples of HER2+ breast cancer patients. Our study revealed that the wild type is the most prevalent allele (77,27%), whereas heterozygous mutation is significantly present in this research (21.21%) and around 1.52% of samples were detected as minor allele. Only one sample was detected as a minor allele (Val/Val) and may have relatively low abundance in the population. This method has been compared to Sanger sequencing and shows 100% of validity.

Keywords: Breast cancer, HER2, I655V, HRM, allele

Katalog: http://http://jurnal.biotek.lipi.go.id/index.php/annales/article/view/310/pdf

Disusun oleh: Ludya AB/Pustakawan

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Improvement of HER2I655V TARMS-PCR Performance by DNA Quality Analysis

Improvement of HER2I655V TARMS-PCR Performance by DNA Quality Analysis

Bugi Ratno Budiarto, Azamris, and Desriani

Annales Bogorienses Vol. 21 (2): 52-62.

 tarmReliable TARMS-PCR is a prerequisite in constructing a solid conclusion in genetic diagnostics. The validity of data generated by this molecular technique in most cases is hampered by a false positive result. In attempt to develop a TARMS-PCR for HER2I655V genotyping with no interfering of bias we used DNase I to eliminate DNA contaminant resided in PCR reagent. TARMS-PCR with no enzymatic pretreatment on PCR master mix kit produced a false positive result on HER2I655V TARMS-PCR using as recombinant plasmids system model proven by the presence of multiple PCR products in Non-Template Control (NTC). A dose of 0.1 U of the enzyme could eliminate this DNA contaminant effectively, although this pretreatment altered the specificity of HER2I655V TARMS-PCR genotyping on certain genotype. Combination of touchdown TARMS-PCR with another allelespecific primer recovered specificity of detection on this model system. Interestingly, this optimized HER2I655V TARMS-PCR can only be used for genotyping the clinical samples if only further optimization was done using genomic DNA as template.

Keywords: TARMS-PCR, HER2I655V, DNase I, Polymorphism

Katalog: http://http://jurnal.biotek.lipi.go.id/index.php/annales/article/view/308/pdf

Disusun oleh: Ludya AB/Pustakawan

 

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Cegah Penyebaran Covid-19, LIPI Desinfeksi Kawasan CSC-BG Cibinong

Cibinong, Humas LIPI. Dalam upaya pencegahan penyebaran wabah Covid-19 yang semakin meluas, LIPI melakukan desinfeksi pada fasilitas publik dan semua area satuan kerja di Kawasan Cibinong Science Center-Botanical Garden (CSC-BG) pada Jumat (3/20), yang meliputi P2 Biomaterial, P2 Biologi, P2 Bioteknologi, P2 Limnologi, PPII, Gedung A Kawasan, Gedung Widya Selaras, dan Rusunawa LIPI. “Sesuai arahan Kepala LIPI, untuk upaya pencegahan penyebaran Covid-19 kami melakukan agenda penyemprotan desinfektan di seluruh Kawasan CSC-BG LIPI. Karena area cukup luas yaitu ada sekitar 9 gedung, jadi ada 5 tim yang akan bertugas”, jelas Ahmad Fathoni, Ketua PME Kedeputian Bidang IPH LIPI. 

Fathoni menjelaskan, ada sekitar 100 liter lebih cairan desinfektan yang akan digunakan untuk di seluruh kawasan. Desinfeksi diprioritaskan pada ruangan yang dipakai oleh banyak sivitas LIPI, yaitu ruang rapat, fasilitas gedung dan bagian luar laboratorium (koridor), dan tempat ibadah. “Untuk yang paling krusial seperti Gedung PPII yang masih ada beberapa pertemuan yang diadakan, kedepannya akan dilakukan penyemprotan desinfektan setiap hari, jadi setelah ada pertemuan seperti rapat bisa langsung disterilkan”, ungkapnya.

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